PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G19060.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 27988.7 Da    PI: 8.7715
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G19060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-32958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  OMERI04G19060.2  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                     79**********************************************95 PP

2K-box103.13.6e-3479173599
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s+++l+  +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++kl
  OMERI04G19060.2  79 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172
                      334488899************************************************************************************9 PP

            K-box  99 e 99 
                      e
  OMERI04G19060.2 173 E 173
                      7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-32276IPR002100Transcription factor, MADS-box
CDDcd002651.55E-43277No hitNo description
PRINTSPR004047.2E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-3187172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.61388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GINTTLEKYN SCCYNAQGSN SALAGGEHQS WYQEMSRLKT KLECLQRSQR HMLGEDLGPL  120
SIKELQQLEK QLEYSLSQAR QRKTQIMMEQ VDDLRRKERQ LGELNKQLKN KLEAEADSSN  180
CRAIQDSWVH GTVVSGGTVL NAQPAPDIDC EPTLQIGYYQ FVRPEAANPR SNGGGGDQNN  240
NFVMGWPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-21170170Myocyte-specific enhancer factor 2B
1tqe_Q5e-21170170Myocyte-specific enhancer factor 2B
1tqe_R5e-21170170Myocyte-specific enhancer factor 2B
1tqe_S5e-21170170Myocyte-specific enhancer factor 2B
3kov_A6e-21269168Myocyte-specific enhancer factor 2A
3kov_B6e-21269168Myocyte-specific enhancer factor 2A
3kov_I6e-21269168Myocyte-specific enhancer factor 2A
3kov_J6e-21269168Myocyte-specific enhancer factor 2A
3p57_A6e-21269168Myocyte-specific enhancer factor 2A
3p57_B6e-21269168Myocyte-specific enhancer factor 2A
3p57_C6e-21269168Myocyte-specific enhancer factor 2A
3p57_D6e-21269168Myocyte-specific enhancer factor 2A
3p57_I6e-21269168Myocyte-specific enhancer factor 2A
3p57_J6e-21269168Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1091530.0AF109153.1 Oryza sativa MADS box transcription factor MADS17 (MADS17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634419.11e-171PREDICTED: MADS-box transcription factor 17
SwissprotQ7XUN21e-173MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A0E0DHK80.0A0A0E0DHK8_9ORYZ; Uncharacterized protein
STRINGLOC_Os04g49150.11e-171(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.16e-92AGAMOUS-like 6